Getting Started | Read in your data | Calculate actual values | Understanding each step of the analysis | Generating quantiles | Using boot.out | Directly binning and finding quantiles | Plotting the results | Identifying outliers | Using the wrapper function fsthet | Customizing the Figures | The data you use | The look of the graph | Saving the graph to a file | The various Fst calculations | Wright's Fst (fst) | Weir's $\theta$ (theta) | A variance-based Fst, $\beta$ (var) | Cockerham and Weir's $\hat{\beta}$ (betahat) | Other Functions | Saving the data and plotting it yourself. | Look at the distribution of allele frequencies | Conclusion